#!/bin/env perl
#
#     jPhobius 1.05 a java implementation of Phobius
#     a hidden Markov Model capable of predicting both Transmembrane Topology
#     and Signal peptides
#
#     (c) 2004 Lukas Kall, Anders Krogh, Erik Sonnhammer.
#
#     Please cite:
#
#     Lukas Kll, Anders Krogh and Erik L. L. Sonnhammer.
#     A Combined Transmembrane Topology and Signal Peptide Prediction Method.
#     Journal of Molecular Biology, 338(5):1027-1036, May 2004.
#
#     The program is distributed under GPL, see http://gnu.org for details
#
#     Script $Revision: 1.2 $
#
use FindBin;
my $JPHOBIUS_DIR = "$FindBin::RealBin";
my @jars =         (<$JPHOBIUS_DIR/*.jar>);
my $CP =           join ":",@jars;
$CP .=             ":$JPHOBIUS_DIR/";
my $CMD =          "java -cp $CP se.ki.cgb.hmmdecode.Phobius " . (join ' ', @ARGV);
exec $CMD
