Phobius ver 1.01
A hidden Markov Model capable of predicting both Transmembrane Topology
and Signal peptides

(c) 2004 Lukas Kall, Anders Krogh, Erik Sonnhammer.

Please cite:

    Lukas Kll, Anders Krogh and Erik L. L. Sonnhammer.
    A Combined Transmembrane Topology and Signal Peptide Prediction Method.
    Journal of Molecular Biology, 338(5):1027-1036, May 2004.

PREREQUISITES
=============

Unix/Linux
Perl 5.6 or later
    
INSTALL
=======

Change current directory to the directory where you want to install phobius
(e.g. /usr/local/share/), and unpack the tar file with the command:

cat /path_to_tarfile/phobius.tar.gz | tar xz

make a link from the file phobius.pl to a directory included in your standard
path.

ln -s /usr/local/share/phobius/phobius.pl /usr/local/bin/phobius

Make sure that the gnuplot package is available in the standard path, if you
want to be able to generate posterior probability plots.

